Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| v8-like glu-specific endopeptidase | SAMN05421757_103473 | Not Available | Negative | 2330217 - 2330993 | 26994.4 |
| protein translocase subunit yajc | SAMN05421757_103474 | Not Available | Positive | 2331210 - 2331539 | 11826.7 |
| preprotein translocase subunit secd | SAMN05421757_103475 | Not Available | Positive | 2331568 - 2333229 | 59691.3 |
| protein translocase subunit secf | SAMN05421757_103476 | Not Available | Positive | 2333231 - 2334199 | 35385.1 |
| uncharacterized conserved protein, contains mth938-like domain | SAMN05421757_103477 | Not Available | Positive | 2334234 - 2334587 | 12267.8 |
| heme exporter protein a | SAMN05421757_103478 | Not Available | Positive | 2334731 - 2335351 | 21433.9 |
| heme exporter protein b | SAMN05421757_103479 | Not Available | Positive | 2335348 - 2336013 | 22646.8 |
| heme exporter protein c | SAMN05421757_103480 | Not Available | Positive | 2336070 - 2336798 | 27002.6 |
| heme exporter protein d | SAMN05421757_103481 | Not Available | Positive | 2336795 - 2336998 | 7291.9 |
| cytochrome c biogenesis protein ccmg, thiol:disulfide interchange protein dsbe | SAMN05421757_103482 | Not Available | Positive | 2336991 - 2337536 | 19233.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
