Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding cassette, subfamily b | SAMN05421757_103463 | Not Available | Positive | 2315177 - 2316994 | 66621.2 |
| multidrug efflux pump | SAMN05421757_103464 | Not Available | Negative | 2317289 - 2321068 | 136791.0 |
| membrane fusion protein, multidrug efflux system | SAMN05421757_103465 | Not Available | Negative | 2321106 - 2322368 | 43888.6 |
| hypothetical protein | SAMN05421757_103466 | Not Available | Positive | 2322659 - 2323318 | 23318.7 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN05421757_103467 | Not Available | Positive | 2323400 - 2324752 | 46672.4 |
| gtp-binding protein | SAMN05421757_103468 | Not Available | Positive | 2324811 - 2326277 | 53724.9 |
| hypothetical protein | SAMN05421757_103469 | Not Available | Negative | 2326284 - 2327021 | 25705.8 |
| sulfotransferase family protein | SAMN05421757_103470 | Not Available | Negative | 2327060 - 2327950 | 34115.4 |
| seryl-trna synthetase | SAMN05421757_103471 | Not Available | Negative | 2328036 - 2329328 | 47570.6 |
| hypothetical protein | SAMN05421757_103472 | Not Available | Negative | 2329432 - 2330124 | 25009.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
