Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN05421757_101178 | Not Available | Negative | 195640 - 196431 | 29503.6 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_101179 | Not Available | Negative | 196388 - 197359 | 34979.3 |
| peptide/nickel transport system permease protein | SAMN05421757_101180 | Not Available | Negative | 197356 - 199248 | 66992.4 |
| peptide/nickel transport system permease protein | SAMN05421757_101181 | Not Available | Negative | 199245 - 200192 | 33970.9 |
| peptide/nickel transport system substrate-binding protein | SAMN05421757_101182 | Not Available | Negative | 200281 - 201855 | 56895.8 |
| uncharacterized conserved protein, ntn-hydrolase superfamily | SAMN05421757_101183 | Not Available | Positive | 201948 - 202604 | 22809.0 |
| allantoate deiminase | SAMN05421757_101184 | Not Available | Positive | 202601 - 203830 | 42411.9 |
| acetamidase/formamidase | SAMN05421757_101185 | Not Available | Positive | 203827 - 204780 | 33296.9 |
| asparagine synthase (glutamine-hydrolysing) | SAMN05421757_101186 | Not Available | Positive | 204841 - 206625 | 65734.5 |
| gnat-family acetyltransferase tigr03103 | SAMN05421757_101187 | Not Available | Positive | 206622 - 208322 | 61979.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
