Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_103453 | Not Available | Positive | 2306940 - 2307191 | 8649.49 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN05421757_103454 | Not Available | Positive | 2307239 - 2307898 | 23373.0 |
| 5'-nucleotidase /3'-nucleotidase /exopolyphosphatase | SAMN05421757_103455 | Not Available | Positive | 2308218 - 2309006 | 27512.7 |
| protein-l-isoaspartate(d-aspartate) o-methyltransferase | SAMN05421757_103456 | Not Available | Positive | 2309003 - 2309644 | 23445.5 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421757_103457 | Not Available | Positive | 2309743 - 2310924 | 40279.4 |
| hypothetical protein | SAMN05421757_103458 | Not Available | Negative | 2311025 - 2311876 | 31470.3 |
| sec-independent protein translocase protein tatc | SAMN05421757_103459 | Not Available | Negative | 2311876 - 2312775 | 33237.1 |
| sec-independent protein translocase protein tatb | SAMN05421757_103460 | Not Available | Negative | 2312786 - 2313286 | 17590.8 |
| sec-independent protein translocase protein tata | SAMN05421757_103461 | Not Available | Negative | 2313331 - 2313555 | 7702.39 |
| iron(iii) transport system atp-binding protein | SAMN05421757_103462 | Not Available | Negative | 2313894 - 2314970 | 39276.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
