Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh dehydrogenase subunit i | SAMN05421757_103423 | Not Available | Positive | 2275169 - 2275663 | 18979.7 |
| 4-carboxymuconolactone decarboxylase | SAMN05421757_103424 | Not Available | Positive | 2275660 - 2276061 | 14376.6 |
| nadh dehydrogenase subunit j | SAMN05421757_103425 | Not Available | Positive | 2276066 - 2276689 | 22432.5 |
| nadh dehydrogenase subunit k | SAMN05421757_103426 | Not Available | Positive | 2276801 - 2277106 | 10888.8 |
| nadh dehydrogenase subunit l | SAMN05421757_103427 | Not Available | Positive | 2277113 - 2279266 | 78036.0 |
| nadh dehydrogenase subunit m | SAMN05421757_103428 | Not Available | Positive | 2279271 - 2280821 | 56778.0 |
| nadh dehydrogenase subunit n | SAMN05421757_103429 | Not Available | Positive | 2280823 - 2282268 | 50822.2 |
| bira family transcriptional regulator, biotin operon repressor / biotin-[acetyl-coa-carboxylase] ligase | SAMN05421757_103430 | Not Available | Positive | 2282255 - 2283013 | 26380.4 |
| type iii pantothenate kinase | SAMN05421757_103431 | Not Available | Positive | 2283059 - 2283844 | 28741.6 |
| ribonuclease j | SAMN05421757_103432 | Not Available | Positive | 2283834 - 2285504 | 60168.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
