Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-methylcrotonyl-coa carboxylase beta subunit | SAMN05421757_103403 | Not Available | Positive | 2256487 - 2258091 | 56658.9 |
| 3-methylcrotonyl-coa carboxylase alpha subunit | SAMN05421757_103404 | Not Available | Positive | 2258195 - 2260153 | 68259.9 |
| glutathione s-transferase | SAMN05421757_103405 | Not Available | Positive | 2260150 - 2260806 | 24897.8 |
| hydroxymethylglutaryl-coa lyase | SAMN05421757_103406 | Not Available | Positive | 2260913 - 2261773 | 29744.6 |
| methylglutaconyl-coa hydratase | SAMN05421757_103407 | Not Available | Positive | 2261893 - 2262684 | 27653.3 |
| nadh dehydrogenase subunit a | SAMN05421757_103408 | Not Available | Positive | 2262843 - 2263208 | 13885.1 |
| nadh dehydrogenase subunit b | SAMN05421757_103409 | Not Available | Positive | 2263199 - 2263732 | 19410.6 |
| nadh dehydrogenase subunit c | SAMN05421757_103410 | Not Available | Positive | 2263809 - 2264417 | 23344.6 |
| sulfotransferase family protein | SAMN05421757_103411 | Not Available | Positive | 2264421 - 2265398 | 36589.7 |
| thioesterase superfamily | SAMN05421757_103412 | Not Available | Positive | 2265494 - 2265919 | 15656.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
