Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pin domain-containing protein | SAMN05421757_103393 | Not Available | Positive | 2245488 - 2246030 | 20126.4 |
| phosphoglycolate phosphatase | SAMN05421757_103394 | Not Available | Negative | 2246067 - 2246732 | 23235.8 |
| udp-n-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate n-acetyltransferase | SAMN05421757_103395 | Not Available | Positive | 2246868 - 2248223 | 47301.2 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN05421757_103396 | Not Available | Positive | 2248223 - 2250040 | 64754.4 |
| hypothetical protein | SAMN05421757_103397 | Not Available | Negative | 2250110 - 2251384 | 44843.0 |
| isovaleryl-coa dehydrogenase | SAMN05421757_103398 | Not Available | Positive | 2251609 - 2252772 | 41760.3 |
| uncharacterized membrane protein | SAMN05421757_103399 | Not Available | Positive | 2252869 - 2253177 | 11227.2 |
| multimeric flavodoxin wrba | SAMN05421757_103400 | Not Available | Positive | 2253233 - 2253994 | 27315.3 |
| acetyl-coa synthetase | SAMN05421757_103401 | Not Available | Positive | 2253991 - 2255568 | 55871.1 |
| ecsc protein family protein | SAMN05421757_103402 | Not Available | Positive | 2255565 - 2256383 | 29208.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
