Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two component transcriptional regulator, winged helix family | SAMN05421757_103383 | Not Available | Positive | 2231772 - 2232485 | 26480.2 |
| dna ligase (nad+) | SAMN05421757_103384 | Not Available | Positive | 2232915 - 2235092 | 78046.1 |
| atp-dependent dna helicase recg | SAMN05421757_103385 | Not Available | Positive | 2235089 - 2237179 | 75901.8 |
| hypothetical protein | SAMN05421757_103386 | Not Available | Positive | 2237372 - 2237494 | 4111.35 |
| cys-trna(pro) deacylase, prolyl-trna editing enzyme ybak/ebsc | SAMN05421757_103387 | Not Available | Negative | 2237699 - 2238178 | 16955.1 |
| glutamate-ammonia-ligase adenylyltransferase | SAMN05421757_103388 | Not Available | Positive | 2238306 - 2241113 | 101790.0 |
| hypothetical protein | SAMN05421757_103389 | Not Available | Positive | 2241110 - 2241397 | 10359.3 |
| 2-keto-3-deoxy-phosphogluconate aldolase | SAMN05421757_103390 | Not Available | Negative | 2241417 - 2242058 | 21364.9 |
| 6-phosphogluconate dehydratase | SAMN05421757_103391 | Not Available | Negative | 2242272 - 2244077 | 63204.7 |
| sam-dependent methyltransferase | SAMN05421757_103392 | Not Available | Positive | 2244286 - 2245488 | 42118.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
