Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_103373 | Not Available | Positive | 2222014 - 2222145 | 4473.5 |
| beta-barrel assembly machine subunit bama | SAMN05421757_103374 | Not Available | Positive | 2222268 - 2224673 | 88914.1 |
| periplasmic chaperone for outer membrane proteins skp | SAMN05421757_103375 | Not Available | Positive | 2224676 - 2225305 | 22780.1 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase | SAMN05421757_103376 | Not Available | Positive | 2225533 - 2226012 | 17429.2 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN05421757_103377 | Not Available | Positive | 2226017 - 2226814 | 27997.8 |
| hypothetical protein | SAMN05421757_103378 | Not Available | Positive | 2226820 - 2227641 | 28581.9 |
| lipid-a-disaccharide synthase | SAMN05421757_103379 | Not Available | Positive | 2227641 - 2228813 | 41328.5 |
| nadh dehydrogenase, fad-containing subunit | SAMN05421757_103380 | Not Available | Negative | 2228891 - 2229973 | 37472.6 |
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | SAMN05421757_103381 | Not Available | Negative | 2230088 - 2231230 | 41413.2 |
| protein of unknown function | SAMN05421757_103382 | Not Available | Positive | 2231361 - 2231645 | 10345.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
