Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamidase-related amidase | SAMN05421757_101168 | Not Available | Negative | 185443 - 186126 | 25369.2 |
| 3-oxoacyl-[acyl-carrier protein] reductase | SAMN05421757_101169 | Not Available | Negative | 186129 - 186908 | 26718.1 |
| spermidine/putrescine transport system permease protein | SAMN05421757_101170 | Not Available | Negative | 186934 - 187734 | 29362.8 |
| spermidine/putrescine transport system permease protein | SAMN05421757_101171 | Not Available | Negative | 187731 - 188585 | 31118.1 |
| spermidine/putrescine transport system atp-binding protein | SAMN05421757_101172 | Not Available | Negative | 188572 - 189645 | 39596.1 |
| spermidine/putrescine transport system substrate-binding protein | SAMN05421757_101173 | Not Available | Negative | 189719 - 190852 | 41730.3 |
| ser/thr protein kinase rdoa involved in cpx stress response, mazf antagonist | SAMN05421757_101174 | Not Available | Positive | 191088 - 192080 | 36769.4 |
| 4-aminobutyrate aminotransferase | SAMN05421757_101175 | Not Available | Positive | 192077 - 193399 | 46550.5 |
| transcriptional regulator, deor family | SAMN05421757_101176 | Not Available | Negative | 193400 - 194188 | 28665.5 |
| hydrolase, peptidase m42 family | SAMN05421757_101177 | Not Available | Positive | 194447 - 195619 | 42090.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
