Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_103353 | Not Available | Negative | 2201667 - 2201801 | 4863.21 |
| shikimate kinase | SAMN05421757_103354 | Not Available | Positive | 2201935 - 2202480 | 19777.1 |
| 3-dehydroquinate synthase | SAMN05421757_103355 | Not Available | Positive | 2202482 - 2203597 | 39681.8 |
| single-strand binding protein | SAMN05421757_103356 | Not Available | Negative | 2203801 - 2204316 | 18263.9 |
| transglycosylase slt domain-containing protein | SAMN05421757_103357 | Not Available | Positive | 2204512 - 2205123 | 22053.4 |
| cytochrome c peroxidase | SAMN05421757_103358 | Not Available | Positive | 2205236 - 2206414 | 42393.4 |
| hypothetical protein | SAMN05421757_103359 | Not Available | Positive | 2206516 - 2207103 | 20816.7 |
| peptide/nickel transport system atp-binding protein | SAMN05421757_103360 | Not Available | Negative | 2207131 - 2209212 | 76062.2 |
| peptide/nickel transport system permease protein | SAMN05421757_103361 | Not Available | Negative | 2209430 - 2210590 | 41999.6 |
| peptide/nickel transport system permease protein | SAMN05421757_103362 | Not Available | Negative | 2210603 - 2211649 | 38223.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
