Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chromosome partitioning atpase, mrp family, contains fe-s cluster | SAMN05421757_103313 | Not Available | Negative | 2149490 - 2150410 | 33481.2 |
| polysaccharide chain length determinant protein, pep-cterm locus subfamily | SAMN05421757_103314 | Not Available | Negative | 2150443 - 2152044 | 59034.8 |
| type ii secretion system protein a | SAMN05421757_103315 | Not Available | Negative | 2152046 - 2152894 | 31330.0 |
| sugar transferase involved in lps biosynthesis (colanic, teichoic acid) | SAMN05421757_103316 | Not Available | Positive | 2153214 - 2153903 | 26010.8 |
| flp pilus assembly protein tadd, contains tpr repeats | SAMN05421757_103317 | Not Available | Positive | 2153875 - 2156430 | 93404.0 |
| hypothetical protein | SAMN05421757_103318 | Not Available | Positive | 2156427 - 2158034 | 57086.9 |
| sulfotransferase family protein | SAMN05421757_103319 | Not Available | Negative | 2158054 - 2158995 | 34700.9 |
| exosortase d, vplpa-cterm-specific | SAMN05421757_103320 | Not Available | Negative | 2158992 - 2160611 | 58816.2 |
| hypothetical protein | SAMN05421757_103321 | Not Available | Negative | 2160865 - 2161254 | 13829.8 |
| choline dehydrogenase | SAMN05421757_103322 | Not Available | Negative | 2161251 - 2162843 | 58081.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
