Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase, gt2 family | SAMN05421757_103303 | Not Available | Negative | 2136912 - 2137871 | 34449.6 |
| sulfotransferase domain-containing protein | SAMN05421757_103304 | Not Available | Negative | 2137868 - 2138701 | 31015.2 |
| hypothetical protein | SAMN05421757_103305 | Not Available | Negative | 2138706 - 2139683 | 34886.7 |
| o-antigen ligase | SAMN05421757_103306 | Not Available | Negative | 2139684 - 2141156 | 53387.5 |
| oligosaccharide biosynthesis protein alg14 like | SAMN05421757_103307 | Not Available | Positive | 2141296 - 2141811 | 18461.2 |
| udp-n-acetylglucosamine transferase subunit alg13 | SAMN05421757_103308 | Not Available | Positive | 2141808 - 2142305 | 17836.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_103309 | Not Available | Negative | 2142302 - 2143252 | 35390.2 |
| hypothetical protein | SAMN05421757_103310 | Not Available | Positive | 2143419 - 2146388 | 103903.0 |
| pkd domain-containing protein | SAMN05421757_103311 | Not Available | Positive | 2146554 - 2148437 | 67155.6 |
| hypothetical protein | SAMN05421757_103312 | Not Available | Negative | 2148442 - 2149458 | 37160.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
