Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xanthine phosphoribosyltransferase | SAMN05421757_103293 | Not Available | Negative | 2127286 - 2127801 | 19378.4 |
| enoyl-[acyl-carrier-protein] reductase | SAMN05421757_103294 | Not Available | Negative | 2127809 - 2128627 | 29172.0 |
| pyridoxamine 5'-phosphate oxidase | SAMN05421757_103295 | Not Available | Positive | 2128763 - 2129365 | 22458.4 |
| cold-shock dna-binding protein family | SAMN05421757_103296 | Not Available | Positive | 2129590 - 2130126 | 19305.9 |
| hypothetical protein | SAMN05421757_103297 | Not Available | Positive | 2130129 - 2130608 | 16850.1 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_103298 | Not Available | Negative | 2130667 - 2131920 | 45626.1 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421757_103299 | Not Available | Negative | 2132075 - 2132938 | 31012.0 |
| mannose-1-phosphate guanylyltransferase/mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase | SAMN05421757_103300 | Not Available | Negative | 2133023 - 2134444 | 51179.9 |
| sulfotransferase family protein | SAMN05421757_103301 | Not Available | Positive | 2134703 - 2135527 | 30554.4 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN05421757_103302 | Not Available | Positive | 2135559 - 2136905 | 47566.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
