Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN05421757_103283 | Not Available | Positive | 2116285 - 2117010 | 26706.8 |
| predicted purr-regulated permease perm | SAMN05421757_103284 | Not Available | Negative | 2117007 - 2118110 | 37908.0 |
| acetyltransferase (gnat) domain-containing protein | SAMN05421757_103285 | Not Available | Positive | 2118214 - 2118660 | 15897.9 |
| uncharacterized membrane protein ydjx, tvp38/tmem64 family, snare-associated domain | SAMN05421757_103286 | Not Available | Negative | 2118644 - 2119360 | 24952.1 |
| protein of unknown function | SAMN05421757_103287 | Not Available | Negative | 2119452 - 2119958 | 18181.2 |
| protein of unknown function | SAMN05421757_103288 | Not Available | Negative | 2120028 - 2121380 | 49603.7 |
| anthranilate synthase component 1 | SAMN05421757_103289 | Not Available | Negative | 2121463 - 2122977 | 54739.4 |
| peptidyl-prolyl cis-trans isomerase d | SAMN05421757_103290 | Not Available | Negative | 2122985 - 2124835 | 65913.4 |
| aspartate/methionine/tyrosine aminotransferase | SAMN05421757_103291 | Not Available | Negative | 2124905 - 2126107 | 42601.9 |
| carboxymethylenebutenolidase | SAMN05421757_103292 | Not Available | Positive | 2126286 - 2127173 | 31718.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
