Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Gp33 | SAMN05421757_102102 | Not Available | Negative | 1022473 - 1022883 | 14202.9 |
| Head-tail connector complex protein | SAMN05421757_102103 | Not Available | Negative | 1022880 - 1023227 | 12687.9 |
| Dna packaging/head-tail-connector | SAMN05421757_102104 | Not Available | Negative | 1023224 - 1023823 | 21842.4 |
| Phage major capsid protein | SAMN05421757_102105 | Not Available | Negative | 1023988 - 1025163 | 41508.8 |
| Putative prohead protease | SAMN05421757_102106 | Not Available | Negative | 1025207 - 1025767 | 20250.2 |
| Portal protein | SAMN05421757_102107 | Not Available | Negative | 1025791 - 1026984 | 42753.0 |
| Terminase large subunit | SAMN05421757_102108 | Not Available | Negative | 1027304 - 1028629 | 48472.9 |
| Attl | Not Available | Not Available | Positive | 4827480 - 4827531 | Not Available |
| Integrase | SAMN05421757_11319 | Not Available | Positive | 4827697 - 4828953 | 45684.7 |
| hypothetical protein | SAMN05421757_11320 | Not Available | Positive | 4828950 - 4829612 | 24569.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
