Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_103243 | Not Available | Negative | 2076365 - 2077069 | 24517.4 |
| lysr family transcriptional regulator, glycine cleavage system transcriptional activator | SAMN05421757_103244 | Not Available | Positive | 2077187 - 2078074 | 31699.2 |
| transketolase | SAMN05421757_103245 | Not Available | Negative | 2078476 - 2080491 | 71469.5 |
| hypothetical protein | SAMN05421757_103246 | Not Available | Positive | 2080744 - 2081160 | 14560.9 |
| cell division protein zapa | SAMN05421757_103247 | Not Available | Positive | 2081153 - 2081548 | 14104.2 |
| monothiol glutaredoxin | SAMN05421757_103248 | Not Available | Negative | 2082079 - 2082441 | 13276.7 |
| hypothetical protein | SAMN05421757_103249 | Not Available | Negative | 2082482 - 2082757 | 10065.0 |
| stress-induced morphogen (activity unknown) | SAMN05421757_103250 | Not Available | Negative | 2082757 - 2082999 | 8648.35 |
| phosphoribosylformylglycinamidine synthase subunit ii | SAMN05421757_103251 | Not Available | Negative | 2083192 - 2085351 | 76340.0 |
| transglycosylase slt domain-containing protein | SAMN05421757_103252 | Not Available | Negative | 2085554 - 2086354 | 28636.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
