Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase family protein | SAMN05421757_103233 | Not Available | Negative | 2068512 - 2069198 | 25557.5 |
| glycosyl transferases group 1 | SAMN05421757_103234 | Not Available | Negative | 2069215 - 2070240 | 38862.5 |
| hypothetical protein | SAMN05421757_103235 | Not Available | Negative | 2070477 - 2070884 | 14463.3 |
| methylmalonate-semialdehyde dehydrogenase | SAMN05421757_103236 | Not Available | Negative | 2071038 - 2072537 | 53532.9 |
| dna-binding transcriptional regulator, lysr family | SAMN05421757_103237 | Not Available | Positive | 2072643 - 2073611 | 34625.8 |
| cbs domain-containing protein | SAMN05421757_103238 | Not Available | Positive | 2073608 - 2074042 | 15365.0 |
| phosphopantetheine adenylyltransferase | SAMN05421757_103239 | Not Available | Positive | 2074210 - 2074710 | 18292.4 |
| hypothetical protein | SAMN05421757_103240 | Not Available | Negative | 2074723 - 2074863 | 5432.7 |
| hypothetical protein | SAMN05421757_103241 | Not Available | Positive | 2075002 - 2076015 | 35240.5 |
| hypothetical protein | SAMN05421757_103242 | Not Available | Negative | 2076127 - 2076375 | 8982.32 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
