Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_103223 | Not Available | Negative | 2056190 - 2057332 | 40788.7 |
| hypothetical chaperone protein | SAMN05421757_103224 | Not Available | Negative | 2057623 - 2058876 | 43553.9 |
| l,d-transpeptidase catalytic domain | SAMN05421757_103225 | Not Available | Negative | 2058968 - 2059552 | 21374.6 |
| hypothetical protein | SAMN05421757_103226 | Not Available | Negative | 2059664 - 2060323 | 23669.5 |
| carboxylate-amine ligase | SAMN05421757_103227 | Not Available | Negative | 2060523 - 2061656 | 42512.0 |
| carbon starvation protein csta | SAMN05421757_103228 | Not Available | Positive | 2062040 - 2063476 | 52005.9 |
| urease accessory protein | SAMN05421757_103229 | Not Available | Positive | 2063666 - 2064262 | 20050.2 |
| hupe / urej protein | SAMN05421757_103230 | Not Available | Positive | 2064264 - 2064869 | 20859.1 |
| imidazolonepropionase | SAMN05421757_103231 | Not Available | Negative | 2064930 - 2066273 | 48524.5 |
| glycosyltransferase family 4 | SAMN05421757_103232 | Not Available | Negative | 2067318 - 2068457 | 41635.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
