Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tat (twin-arginine translocation) pathway signal sequence | SAMN05421757_103203 | Not Available | Positive | 2028738 - 2029868 | 41111.0 |
| trap-type mannitol/chloroaromatic compound transport system, small permease component | SAMN05421757_103204 | Not Available | Positive | 2029942 - 2030526 | 21990.9 |
| trap transporter, dctm subunit | SAMN05421757_103205 | Not Available | Positive | 2030523 - 2031944 | 52321.7 |
| aspartyl-trna(asn)/glutamyl-trna(gln) amidotransferase subunit a | SAMN05421757_103206 | Not Available | Positive | 2031934 - 2033295 | 47952.3 |
| hypothetical protein | SAMN05421757_103207 | Not Available | Positive | 2033307 - 2033468 | 5758.4 |
| lactate dehydrogenase | SAMN05421757_103208 | Not Available | Positive | 2033473 - 2034432 | 34141.0 |
| type i secretion c-terminal target domain (vc_a0849 subclass) | SAMN05421757_103209 | Not Available | Positive | 2034747 - 2037185 | 84108.4 |
| ca2+-binding protein, rtx toxin-related | SAMN05421757_103210 | Not Available | Negative | 2037195 - 2042402 | 181587.0 |
| diamine n-acetyltransferase | SAMN05421757_103211 | Not Available | Negative | 2042622 - 2043134 | 18477.2 |
| trap-type uncharacterized transport system, substrate-binding protein | SAMN05421757_103212 | Not Available | Positive | 2043405 - 2044742 | 47811.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
