Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly protein sufd | SAMN05421757_103193 | Not Available | Positive | 2019953 - 2021248 | 46803.1 |
| yip1 domain-containing protein | SAMN05421757_103194 | Not Available | Positive | 2021252 - 2021758 | 18064.4 |
| yip1 domain-containing protein | SAMN05421757_103195 | Not Available | Positive | 2021770 - 2022384 | 21829.5 |
| cysteine desulfurase | SAMN05421757_103196 | Not Available | Positive | 2022377 - 2023597 | 43840.6 |
| Trna-arg | Not Available | Not Available | Positive | 2023683 - 2023759 | Not Available |
| cytochrome c553 | SAMN05421757_103198 | Not Available | Negative | 2023845 - 2024423 | 20493.3 |
| hypothetical protein | SAMN05421757_103199 | Not Available | Negative | 2024420 - 2025682 | 46411.4 |
| transcriptional regulator, gntr family | SAMN05421757_103200 | Not Available | Positive | 2025925 - 2026575 | 24670.4 |
| cytochrome c | SAMN05421757_103201 | Not Available | Negative | 2026862 - 2027284 | 15126.9 |
| gst-like protein | SAMN05421757_103202 | Not Available | Negative | 2027661 - 2028299 | 24206.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
