Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_103163 | Not Available | Positive | 1991471 - 1991878 | 13890.2 |
| threonine dehydratase | SAMN05421757_103164 | Not Available | Positive | 1991952 - 1992926 | 33990.7 |
| hypothetical protein | SAMN05421757_103165 | Not Available | Positive | 1993025 - 1994005 | 36052.2 |
| predicted dna-binding protein, mmcq/yjbr family | SAMN05421757_103166 | Not Available | Negative | 1994015 - 1994473 | 16226.2 |
| cation transport protein chac | SAMN05421757_103167 | Not Available | Positive | 1994490 - 1995158 | 24727.7 |
| cysteinyl-trna synthetase | SAMN05421757_103168 | Not Available | Positive | 1995345 - 1996733 | 51983.9 |
| 2-isopropylmalate synthase | SAMN05421757_103169 | Not Available | Positive | 1996806 - 1998431 | 57887.6 |
| methyltransferase domain-containing protein | SAMN05421757_103170 | Not Available | Positive | 1998443 - 1999162 | 25852.7 |
| squalene/phytoene synthase | SAMN05421757_103171 | Not Available | Positive | 1999159 - 1999929 | 27576.1 |
| predicted arabinose efflux permease, mfs family | SAMN05421757_103172 | Not Available | Negative | 2000009 - 2001226 | 42296.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
