Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-n-acetylhexosaminidase | SAMN05421757_103143 | Not Available | Positive | 1974871 - 1975887 | 36376.7 |
| condensin subunit scpa | SAMN05421757_103144 | Not Available | Positive | 1975880 - 1976704 | 30570.0 |
| condensin subunit scpb | SAMN05421757_103145 | Not Available | Positive | 1976697 - 1977428 | 27092.7 |
| fasciclin domain-containing protein | SAMN05421757_103146 | Not Available | Positive | 1977720 - 1978769 | 35659.3 |
| lactoylglutathione lyase | SAMN05421757_103147 | Not Available | Positive | 1978892 - 1979287 | 14975.7 |
| dctp deaminase | SAMN05421757_103148 | Not Available | Negative | 1979379 - 1980455 | 38640.3 |
| Trna-pro | Not Available | Not Available | Positive | 1980538 - 1980614 | Not Available |
| dna-binding transcriptional regulator, merr family | SAMN05421757_103150 | Not Available | Negative | 1980679 - 1981512 | 28988.1 |
| integration host factor subunit alpha | SAMN05421757_103151 | Not Available | Negative | 1981525 - 1981827 | 11261.6 |
| 3-oxoacyl-[acyl-carrier-protein] synthase iii | SAMN05421757_103152 | Not Available | Negative | 1982005 - 1982976 | 33923.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
