Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN05421757_10363 | Not Available | Positive | 1887333 - 1888781 | 50222.3 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | SAMN05421757_10364 | Not Available | Positive | 1888794 - 1889876 | 38549.0 |
| short-chain dehydrogenase | SAMN05421757_10365 | Not Available | Positive | 1889892 - 1890545 | 22257.8 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | SAMN05421757_10366 | Not Available | Positive | 1890691 - 1892097 | 49182.4 |
| hypothetical protein | SAMN05421757_10367 | Not Available | Negative | 1892119 - 1892802 | 25440.8 |
| hypothetical protein | SAMN05421757_10368 | Not Available | Negative | 1892946 - 1894148 | 42308.8 |
| cell division protein ftsw | SAMN05421757_10369 | Not Available | Positive | 1894392 - 1895471 | 38326.8 |
| udp-n-acetylglucosamine--n-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | SAMN05421757_10370 | Not Available | Positive | 1895471 - 1896592 | 39376.5 |
| udp-n-acetylmuramate--l-alanine ligase | SAMN05421757_10371 | Not Available | Positive | 1896592 - 1898007 | 50524.4 |
| protein of unknown function | SAMN05421757_10372 | Not Available | Positive | 1898055 - 1898333 | 10040.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
