Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isocitrate dehydrogenase | SAMN05421757_101138 | Not Available | Positive | 147047 - 149260 | 78589.3 |
| hypothetical protein | SAMN05421757_101139 | Not Available | Negative | 149479 - 150588 | 41535.4 |
| sulfate permease, sulp family | SAMN05421757_101140 | Not Available | Negative | 150662 - 152401 | 61824.2 |
| sulfide:quinone oxidoreductase | SAMN05421757_101141 | Not Available | Negative | 152463 - 154151 | 60987.3 |
| glyoxylase, beta-lactamase superfamily ii | SAMN05421757_101142 | Not Available | Negative | 154234 - 155115 | 32162.3 |
| hypothetical protein | SAMN05421757_101143 | Not Available | Negative | 155126 - 155641 | 18288.4 |
| hypothetical protein | SAMN05421757_101144 | Not Available | Negative | 155643 - 156071 | 14587.4 |
| protein of unknown function | SAMN05421757_101145 | Not Available | Negative | 156075 - 156281 | 7090.99 |
| cyclic nucleotide-binding protein | SAMN05421757_101146 | Not Available | Negative | 156528 - 157184 | 24006.8 |
| elongation factor g | SAMN05421757_101147 | Not Available | Positive | 157577 - 159502 | 68429.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
