Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate/methionine/tyrosine aminotransferase | SAMN05421757_10333 | Not Available | Positive | 1853124 - 1854263 | 41050.1 |
| n-acetylmuramoyl-l-alanine amidase | SAMN05421757_10334 | Not Available | Positive | 1854437 - 1855657 | 44076.2 |
| methyltransferase domain-containing protein | SAMN05421757_10335 | Not Available | Negative | 1855644 - 1856258 | 22096.2 |
| penicillin-binding protein 1a | SAMN05421757_10336 | Not Available | Positive | 1856459 - 1858978 | 92165.3 |
| bacterial peptide chain release factor 2 (brf-2) | SAMN05421757_10337 | Not Available | Positive | 1859096 - 1860220 | 41376.3 |
| uncharacterized membrane protein | SAMN05421757_10338 | Not Available | Positive | 1860361 - 1861161 | 29452.7 |
| protein ccma, bactofilin family | SAMN05421757_10339 | Not Available | Negative | 1861236 - 1861739 | 17417.7 |
| murein dd-endopeptidase mepm and murein hydrolase activator nlpd, contain lysm domain | SAMN05421757_10340 | Not Available | Negative | 1861729 - 1863048 | 48779.8 |
| uncharacterized conserved protein, contains ferritin-like duf455 domain | SAMN05421757_10341 | Not Available | Negative | 1863257 - 1864087 | 30441.2 |
| peroxiredoxin q/bcp | SAMN05421757_10342 | Not Available | Negative | 1864179 - 1864640 | 16617.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
