Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_10323 | Not Available | Negative | 1842366 - 1842857 | 17514.2 |
| acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase | SAMN05421757_10324 | Not Available | Negative | 1842975 - 1844366 | 50537.6 |
| hypothetical protein | SAMN05421757_10325 | Not Available | Positive | 1844489 - 1845070 | 20207.2 |
| 5-aminolevulinate synthase | SAMN05421757_10326 | Not Available | Positive | 1845194 - 1846429 | 44878.9 |
| protein rodz, contains xre-like hth and duf4115 domains | SAMN05421757_10327 | Not Available | Positive | 1846547 - 1847875 | 46478.9 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | SAMN05421757_10328 | Not Available | Positive | 1847973 - 1849100 | 40017.0 |
| multidrug resistance efflux pump | SAMN05421757_10329 | Not Available | Negative | 1849176 - 1850411 | 44817.8 |
| hypothetical protein | SAMN05421757_10330 | Not Available | Negative | 1850404 - 1850847 | 16153.5 |
| protein-disulfide isomerase | SAMN05421757_10331 | Not Available | Negative | 1850955 - 1851704 | 27090.2 |
| putative zn-dependent protease, contains tpr repeats | SAMN05421757_10332 | Not Available | Negative | 1851701 - 1853056 | 47848.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
