Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| site-specific recombinase xerd | SAMN05421757_1033 | Not Available | Negative | 1828497 - 1829735 | 47044.9 |
| manganese/zinc/iron transport system substrate-binding protein | SAMN05421757_1034 | Not Available | Positive | 1830109 - 1831074 | 34003.7 |
| manganese/zinc/iron transport system atp- binding protein | SAMN05421757_1035 | Not Available | Positive | 1831085 - 1831894 | 29038.9 |
| manganese/zinc/iron transport system permease protein | SAMN05421757_1036 | Not Available | Positive | 1831900 - 1833105 | 42358.6 |
| manganese/zinc/iron transport system permease protein | SAMN05421757_1037 | Not Available | Positive | 1833102 - 1834031 | 32074.3 |
| 23s rrna (guanosine2251-2'-o)-methyltransferase | SAMN05421757_1038 | Not Available | Positive | 1834200 - 1834994 | 28117.7 |
| hypothetical protein | SAMN05421757_1039 | Not Available | Positive | 1834998 - 1835288 | 10625.9 |
| hypothetical protein | SAMN05421757_10310 | Not Available | Positive | 1835508 - 1835963 | 16735.4 |
| phosphoribosyl-atp pyrophosphatase | SAMN05421757_10311 | Not Available | Negative | 1835960 - 1836268 | 11046.2 |
| imidazole glycerol phosphate synthase subunit hisf | SAMN05421757_10312 | Not Available | Negative | 1836333 - 1837094 | 26473.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
