Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr02302 family protein | SAMN05421757_101128 | Not Available | Positive | 133489 - 136122 | 95592.5 |
| trna pseudouridine38-40 synthase | SAMN05421757_101129 | Not Available | Negative | 136243 - 137025 | 29126.5 |
| hypothetical protein | SAMN05421757_101130 | Not Available | Positive | 137172 - 138608 | 52244.9 |
| putative membrane protein | SAMN05421757_101131 | Not Available | Positive | 138739 - 139749 | 34989.7 |
| uncharacterized membrane protein | SAMN05421757_101132 | Not Available | Negative | 139792 - 140616 | 30482.8 |
| isoleucyl-trna synthetase | SAMN05421757_101133 | Not Available | Positive | 141050 - 143986 | 109928.0 |
| nitric oxide dioxygenase | SAMN05421757_101134 | Not Available | Negative | 144090 - 144509 | 15865.0 |
| thioredoxin | SAMN05421757_101135 | Not Available | Positive | 144758 - 145204 | 16082.6 |
| Trna-ala | Not Available | Not Available | Positive | 145240 - 145312 | Not Available |
| multicopper oxidase with three cupredoxin domains (includes cell division protein ftsp and spore coat protein cota) | SAMN05421757_101137 | Not Available | Positive | 145443 - 146834 | 50536.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
