Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trimethylamine-n-oxide reductase (cytochrome c), cytochrome c-type subunit torc | SAMN05421757_102780 | Not Available | Positive | 1728416 - 1729102 | 24485.3 |
| hpt domain-containing protein | SAMN05421757_102781 | Not Available | Positive | 1729105 - 1731477 | 85137.4 |
| yhs domain-containing protein | SAMN05421757_102782 | Not Available | Negative | 1731631 - 1732113 | 17097.1 |
| nicotinamidase-related amidase | SAMN05421757_102783 | Not Available | Negative | 1732377 - 1733222 | 30097.5 |
| transcriptional regulator, arac family | SAMN05421757_102784 | Not Available | Positive | 1733502 - 1734518 | 37532.7 |
| hypothetical protein | SAMN05421757_102785 | Not Available | Negative | 1734577 - 1735041 | 17964.9 |
| hypothetical protein | SAMN05421757_102786 | Not Available | Negative | 1735120 - 1735269 | 5940.42 |
| uncharacterized peroxidase-related enzyme | SAMN05421757_102787 | Not Available | Negative | 1735294 - 1735842 | 19153.8 |
| membrane fusion protein, cu(i)/ag(i) efflux system | SAMN05421757_102788 | Not Available | Negative | 1736283 - 1736786 | 17492.8 |
| cytochrome c, mono- and diheme variants | SAMN05421757_102789 | Not Available | Negative | 1737229 - 1738116 | 30933.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
