Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa acetyltransferase | SAMN05421757_101118 | Not Available | Negative | 124780 - 125955 | 40731.7 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN05421757_101119 | Not Available | Negative | 126158 - 127009 | 31330.8 |
| dna-3-methyladenine glycosylase i | SAMN05421757_101120 | Not Available | Positive | 127115 - 127687 | 21123.1 |
| rhodanese-related sulfurtransferase | SAMN05421757_101121 | Not Available | Positive | 127758 - 128126 | 12712.5 |
| hypothetical protein | SAMN05421757_101122 | Not Available | Negative | 128149 - 128583 | 16530.9 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421757_101123 | Not Available | Negative | 128936 - 129493 | 20112.2 |
| argininosuccinate lyase | SAMN05421757_101124 | Not Available | Positive | 129517 - 130914 | 50244.9 |
| hypothetical protein | SAMN05421757_101125 | Not Available | Positive | 131005 - 131196 | 6047.16 |
| hypothetical protein | SAMN05421757_101126 | Not Available | Negative | 131222 - 131941 | 26421.1 |
| diaminopimelate decarboxylase | SAMN05421757_101127 | Not Available | Positive | 132171 - 133439 | 45215.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
