Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoyl(octanoyl) transferase | SAMN05421757_102719 | Not Available | Positive | 1658427 - 1659080 | 24134.8 |
| cytochrome c oxidase subunit 1 | SAMN05421757_102720 | Not Available | Positive | 1659366 - 1661039 | 61958.8 |
| hydrophobe/amphiphile efflux-1 (hae1) family protein | SAMN05421757_102721 | Not Available | Negative | 1661284 - 1664382 | 108208.0 |
| rnd family efflux transporter, mfp subunit | SAMN05421757_102722 | Not Available | Negative | 1664382 - 1665635 | 43187.9 |
| hypothetical protein | SAMN05421757_102723 | Not Available | Negative | 1665852 - 1666298 | 16099.9 |
| uncharacterized membrane protein | SAMN05421757_102724 | Not Available | Positive | 1666427 - 1666936 | 19555.4 |
| hypothetical protein | SAMN05421757_102725 | Not Available | Positive | 1666941 - 1667858 | 34373.4 |
| hypothetical protein | SAMN05421757_102726 | Not Available | Negative | 1667889 - 1668350 | 16776.1 |
| carbamoyl-phosphate synthase small subunit | SAMN05421757_102727 | Not Available | Positive | 1668480 - 1669637 | 41661.5 |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN05421757_102728 | Not Available | Positive | 1669724 - 1671724 | 74445.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
