Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system atp-binding protein | SAMN05421757_102699 | Not Available | Positive | 1640165 - 1640851 | 24651.6 |
| putative abc transport system permease protein | SAMN05421757_102700 | Not Available | Positive | 1640851 - 1642182 | 46856.2 |
| hypothetical protein | SAMN05421757_102701 | Not Available | Positive | 1642203 - 1642859 | 23716.7 |
| hypothetical protein | SAMN05421757_102702 | Not Available | Positive | 1643699 - 1644049 | 12743.0 |
| kap family p-loop domain-containing protein | SAMN05421757_102703 | Not Available | Negative | 1644744 - 1646729 | 75228.4 |
| threonyl-trna synthetase | SAMN05421757_102704 | Not Available | Positive | 1647813 - 1649759 | 74460.4 |
| hypothetical protein | SAMN05421757_102705 | Not Available | Negative | 1649828 - 1650469 | 21749.2 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421757_102706 | Not Available | Negative | 1650466 - 1651026 | 20693.5 |
| uncharacterized membrane protein | SAMN05421757_102707 | Not Available | Positive | 1651187 - 1651480 | 9783.47 |
| hypothetical protein | SAMN05421757_102708 | Not Available | Positive | 1651554 - 1652420 | 31569.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
