Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421757_102689 | Not Available | Positive | 1629762 - 1630094 | 12367.1 |
| site-specific recombinase xerd | SAMN05421757_102690 | Not Available | Positive | 1630415 - 1631797 | 51450.9 |
| hypothetical protein | SAMN05421757_102691 | Not Available | Positive | 1631794 - 1632051 | 9504.65 |
| hypothetical protein | SAMN05421757_102692 | Not Available | Positive | 1632048 - 1632602 | 19908.5 |
| dna binding domain-containing protein, excisionase family | SAMN05421757_102693 | Not Available | Positive | 1632751 - 1632984 | 8629.3 |
| hypothetical protein | SAMN05421757_102694 | Not Available | Positive | 1633040 - 1633342 | 11454.7 |
| primase c terminal 2 (prict-2) | SAMN05421757_102695 | Not Available | Positive | 1633335 - 1635344 | 74863.7 |
| porin | SAMN05421757_102696 | Not Available | Negative | 1636038 - 1637288 | 44891.8 |
| arac-type dna-binding protein | SAMN05421757_102697 | Not Available | Negative | 1637453 - 1638496 | 37583.3 |
| pro-hyp dipeptidase. metallo peptidase. merops family m38 | SAMN05421757_102698 | Not Available | Positive | 1638731 - 1640107 | 49299.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
