Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose isomerase | SAMN05421757_102679 | Not Available | Positive | 1614155 - 1615459 | 48861.4 |
| major facilitator superfamily protein | SAMN05421757_102680 | Not Available | Positive | 1615619 - 1616878 | 44331.8 |
| hypothetical protein | SAMN05421757_102681 | Not Available | Positive | 1616925 - 1617671 | 26928.6 |
| methionyl-trna synthetase | SAMN05421757_102682 | Not Available | Positive | 1617754 - 1619472 | 64026.0 |
| putative abc transport system atp-binding protein | SAMN05421757_102683 | Not Available | Positive | 1619767 - 1620423 | 23262.8 |
| putative abc transport system permease protein | SAMN05421757_102684 | Not Available | Positive | 1620420 - 1622828 | 85238.0 |
| predicted secreted hydrolase | SAMN05421757_102685 | Not Available | Positive | 1622818 - 1623939 | 40482.9 |
| valyl-trna synthetase | SAMN05421757_102686 | Not Available | Positive | 1624119 - 1627262 | 116769.0 |
| protein of unknown function | SAMN05421757_102687 | Not Available | Positive | 1627381 - 1628847 | 51339.4 |
| protein of unknown function | SAMN05421757_102688 | Not Available | Positive | 1628852 - 1629757 | 32014.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
