Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted dehydrogenase | SAMN05421757_102669 | Not Available | Negative | 1601451 - 1602599 | 41215.0 |
| sugar phosphate isomerase/epimerase | SAMN05421757_102670 | Not Available | Negative | 1602601 - 1603659 | 39130.9 |
| transcriptional regulator, laci family | SAMN05421757_102671 | Not Available | Positive | 1603853 - 1604911 | 38988.8 |
| cytochrome c peroxidase | SAMN05421757_102672 | Not Available | Positive | 1604934 - 1606268 | 47385.5 |
| repeat domain-containing protein | SAMN05421757_102673 | Not Available | Negative | 1606473 - 1608050 | 56199.8 |
| sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domain | SAMN05421757_102674 | Not Available | Negative | 1608047 - 1609318 | 45169.7 |
| xylose-binding protein | SAMN05421757_102675 | Not Available | Positive | 1609532 - 1610557 | 35277.3 |
| d-xylose transport system permease protein | SAMN05421757_102676 | Not Available | Positive | 1610641 - 1611939 | 46209.6 |
| monosaccharide abc transporter atp-binding protein, cut2 family | SAMN05421757_102677 | Not Available | Positive | 1611943 - 1612716 | 27888.9 |
| xylulokinase | SAMN05421757_102678 | Not Available | Positive | 1612716 - 1614158 | 50098.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
