Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, non-motile, rod-shaped bacterium that exhibits aerobic respiration. This bacterium thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The genomic characteristics of T. sediminicola include a single replicon, as evidenced by its accession number FZOY00000000.1. This genetic simplicity may suggest a streamlined metabolic and reproductive strategy, which is often advantageous for survival in specific ecological niches. Given its aerobic nature and mesophilic growth requirements, T. sediminicola is likely well-adapted to environments with ample oxygen and moderate temperatures, such as sediment habitats. The presence of such bacteria in sediment ecosystems can play a significant role in biogeochemical cycles, particularly in the breakdown of organic matter and the cycling of nutrients. Their metabolic activities could contribute to the overall health and functionality of the sediment environment, supporting diverse microbial communities and influencing sediment composition. In summary, Tropicimonas sediminicola strain DSM 29339 exemplifies a specialized microbial organism adapted to specific environmental conditions, emphasizing the ecological importance of mesophilic, aerobic bacteria in sedimentary ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339 genome assembly,

Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
predicted dehydrogenaseSAMN05421757_102669Not AvailableNegative1601451 - 160259941215.0
sugar phosphate isomerase/epimeraseSAMN05421757_102670Not AvailableNegative1602601 - 160365939130.9
transcriptional regulator, laci familySAMN05421757_102671Not AvailablePositive1603853 - 160491138988.8
cytochrome c peroxidaseSAMN05421757_102672Not AvailablePositive1604934 - 160626847385.5
repeat domain-containing proteinSAMN05421757_102673Not AvailableNegative1606473 - 160805056199.8
sugar kinase of the nbd/hsp70 family, may contain an n-terminal hth domainSAMN05421757_102674Not AvailableNegative1608047 - 160931845169.7
xylose-binding proteinSAMN05421757_102675Not AvailablePositive1609532 - 161055735277.3
d-xylose transport system permease proteinSAMN05421757_102676Not AvailablePositive1610641 - 161193946209.6
monosaccharide abc transporter atp-binding protein, cut2 familySAMN05421757_102677Not AvailablePositive1611943 - 161271627888.9
xylulokinaseSAMN05421757_102678Not AvailablePositive1612716 - 161415850098.4

Displaying genes 1531 – 1540 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.