Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitt/taut family transport system atp-binding protein | SAMN05421757_102629 | Not Available | Negative | 1561634 - 1562458 | 30306.3 |
| catechol 2,3-dioxygenase | SAMN05421757_102630 | Not Available | Negative | 1562526 - 1562948 | 14651.4 |
| dihydropyrimidinase | SAMN05421757_102631 | Not Available | Negative | 1563004 - 1564455 | 52788.7 |
| n-carbamoyl-l-amino-acid hydrolase | SAMN05421757_102632 | Not Available | Negative | 1564561 - 1565811 | 44486.1 |
| hypothetical protein | SAMN05421757_102633 | Not Available | Negative | 1565830 - 1566225 | 13875.9 |
| beta-alanine--pyruvate transaminase | SAMN05421757_102634 | Not Available | Negative | 1566236 - 1567561 | 47824.4 |
| transcriptional regulator, tetr family | SAMN05421757_102635 | Not Available | Positive | 1567737 - 1568375 | 23840.8 |
| dihydropyrimidine dehydrogenase (nad+) subunit prea | SAMN05421757_102636 | Not Available | Negative | 1568438 - 1569745 | 47066.3 |
| glutamate synthase (nadph/nadh) small chain | SAMN05421757_102637 | Not Available | Negative | 1569760 - 1571121 | 48056.0 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | SAMN05421757_102638 | Not Available | Positive | 1571412 - 1571903 | 16800.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
