Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/amide abc transporter membrane protein 1, haat family | SAMN05421757_102619 | Not Available | Positive | 1552133 - 1553155 | 36564.0 |
| amino acid/amide abc transporter membrane protein 2, haat family | SAMN05421757_102620 | Not Available | Positive | 1553160 - 1554383 | 44796.3 |
| amino acid/amide abc transporter atp-binding protein 1, haat family | SAMN05421757_102621 | Not Available | Positive | 1554397 - 1555152 | 27755.8 |
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN05421757_102622 | Not Available | Positive | 1555206 - 1555961 | 27574.2 |
| hypothetical protein | SAMN05421757_102623 | Not Available | Positive | 1556196 - 1556366 | 5694.75 |
| pyruvate kinase | SAMN05421757_102624 | Not Available | Positive | 1556504 - 1558021 | 54567.7 |
| hypothetical protein | SAMN05421757_102625 | Not Available | Positive | 1558172 - 1558705 | 18392.3 |
| nitt/taut family transport system substrate-binding protein | SAMN05421757_102626 | Not Available | Negative | 1558795 - 1559778 | 35779.3 |
| nitt/taut family transport system permease protein | SAMN05421757_102627 | Not Available | Negative | 1559832 - 1560677 | 30256.6 |
| nitt/taut family transport system permease protein | SAMN05421757_102628 | Not Available | Negative | 1560674 - 1561606 | 33204.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
