Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, marr family | SAMN05421757_102599 | Not Available | Negative | 1532853 - 1533326 | 17541.1 |
| enoyl-coa hydratase/carnithine racemase | SAMN05421757_102600 | Not Available | Negative | 1533331 - 1534098 | 27194.1 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_102601 | Not Available | Negative | 1534110 - 1534874 | 26563.0 |
| acetyl esterase/lipase | SAMN05421757_102602 | Not Available | Negative | 1534949 - 1535824 | 31232.8 |
| trap transporter, dctm subunit | SAMN05421757_102603 | Not Available | Negative | 1535990 - 1537306 | 46674.9 |
| tripartite atp-independent transporter, dctq component | SAMN05421757_102604 | Not Available | Negative | 1537303 - 1537890 | 20992.9 |
| trap-type c4-dicarboxylate transport system, substrate-binding protein | SAMN05421757_102605 | Not Available | Negative | 1537952 - 1539001 | 37564.9 |
| Trna-thr | Not Available | Not Available | Positive | 1539407 - 1539482 | Not Available |
| hypothetical protein | SAMN05421757_102607 | Not Available | Positive | 1539661 - 1540539 | 33279.4 |
| uncharacterized conserved protein, upf0335 family | SAMN05421757_102608 | Not Available | Negative | 1540561 - 1540842 | 10486.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
