Tropicimonas sediminicola strain DSM 29339

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Tropicimonas

Description

Tropicimonas sediminicola strain DSM 29339 is a Gram-negative, non-motile, rod-shaped bacterium that exhibits aerobic respiration. This bacterium thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range, indicating its preference for moderate temperature conditions. The genomic characteristics of T. sediminicola include a single replicon, as evidenced by its accession number FZOY00000000.1. This genetic simplicity may suggest a streamlined metabolic and reproductive strategy, which is often advantageous for survival in specific ecological niches. Given its aerobic nature and mesophilic growth requirements, T. sediminicola is likely well-adapted to environments with ample oxygen and moderate temperatures, such as sediment habitats. The presence of such bacteria in sediment ecosystems can play a significant role in biogeochemical cycles, particularly in the breakdown of organic matter and the cycling of nutrients. Their metabolic activities could contribute to the overall health and functionality of the sediment environment, supporting diverse microbial communities and influencing sediment composition. In summary, Tropicimonas sediminicola strain DSM 29339 exemplifies a specialized microbial organism adapted to specific environmental conditions, emphasizing the ecological importance of mesophilic, aerobic bacteria in sedimentary ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusTropicimonas
SpeciesTropicimonas sediminicola
Strainstrain DSM 29339

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tropicimonas sediminicola strain DSM 29339 genome assembly,

Gene Summary

Adenine Count

869409 bp

Thymine Count

870408 bp

Guanine Count

1713070 bp

Cytosine Count

1721333 bp

Genome Length

5174220 bp

Protein-coding Genes

4782 genes

Non-Coding Genes

72 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized conserved protein, duf849 familySAMN05421757_102589Not AvailableNegative1522857 - 152368729760.5
protocatechuate 3,4-dioxygenase, alpha subunitSAMN05421757_102590Not AvailableNegative1523787 - 152440722949.2
protocatechuate 3,4-dioxygenase beta subunitSAMN05421757_102591Not AvailableNegative1524410 - 152513827439.2
4-carboxymuconolactone decarboxylaseSAMN05421757_102592Not AvailableNegative1525173 - 152555013953.6
3-oxoadipate enol-lactonaseSAMN05421757_102593Not AvailableNegative1525543 - 152633127646.4
p-hydroxybenzoate 3-monooxygenaseSAMN05421757_102594Not AvailableNegative1526331 - 152750043908.9
lysr family transcriptional regulator, pca operon transcriptional activatorSAMN05421757_102595Not AvailablePositive1527594 - 152850833394.6
hypothetical proteinSAMN05421757_102596Not AvailableNegative1528526 - 153010656174.2
hypothetical proteinSAMN05421757_102597Not AvailableNegative1530108 - 153098032778.1
feruloyl-coa synthaseSAMN05421757_102598Not AvailableNegative1531014 - 153283166198.6

Displaying genes 1451 – 1460 of 4854 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.