Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, duf849 family | SAMN05421757_102589 | Not Available | Negative | 1522857 - 1523687 | 29760.5 |
| protocatechuate 3,4-dioxygenase, alpha subunit | SAMN05421757_102590 | Not Available | Negative | 1523787 - 1524407 | 22949.2 |
| protocatechuate 3,4-dioxygenase beta subunit | SAMN05421757_102591 | Not Available | Negative | 1524410 - 1525138 | 27439.2 |
| 4-carboxymuconolactone decarboxylase | SAMN05421757_102592 | Not Available | Negative | 1525173 - 1525550 | 13953.6 |
| 3-oxoadipate enol-lactonase | SAMN05421757_102593 | Not Available | Negative | 1525543 - 1526331 | 27646.4 |
| p-hydroxybenzoate 3-monooxygenase | SAMN05421757_102594 | Not Available | Negative | 1526331 - 1527500 | 43908.9 |
| lysr family transcriptional regulator, pca operon transcriptional activator | SAMN05421757_102595 | Not Available | Positive | 1527594 - 1528508 | 33394.6 |
| hypothetical protein | SAMN05421757_102596 | Not Available | Negative | 1528526 - 1530106 | 56174.2 |
| hypothetical protein | SAMN05421757_102597 | Not Available | Negative | 1530108 - 1530980 | 32778.1 |
| feruloyl-coa synthase | SAMN05421757_102598 | Not Available | Negative | 1531014 - 1532831 | 66198.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
