Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/amide abc transporter atp-binding protein 1, haat family | SAMN05421757_102579 | Not Available | Negative | 1513008 - 1513736 | 25877.5 |
| amino acid/amide abc transporter substrate-binding protein, haat family | SAMN05421757_102580 | Not Available | Negative | 1513785 - 1515065 | 45484.3 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN05421757_102581 | Not Available | Negative | 1515102 - 1516031 | 33517.9 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_102582 | Not Available | Negative | 1516035 - 1516829 | 27402.1 |
| cupin domain-containing protein | SAMN05421757_102583 | Not Available | Negative | 1516833 - 1517189 | 12749.2 |
| ribonuclease z | SAMN05421757_102584 | Not Available | Negative | 1517193 - 1518158 | 34724.1 |
| kynurenine formamidase | SAMN05421757_102585 | Not Available | Negative | 1518231 - 1519067 | 31383.1 |
| transcriptional regulator, iclr family | SAMN05421757_102586 | Not Available | Positive | 1519282 - 1520055 | 28095.7 |
| maltoporin | SAMN05421757_102587 | Not Available | Negative | 1520192 - 1521469 | 46184.8 |
| 3-carboxy-cis,cis-muconate cycloisomerase | SAMN05421757_102588 | Not Available | Negative | 1521710 - 1522768 | 37675.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
