Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, paax family | SAMN05421757_102549 | Not Available | Positive | 1473745 - 1474566 | 29671.1 |
| starch phosphorylase | SAMN05421757_102550 | Not Available | Positive | 1474752 - 1477145 | 90462.6 |
| 1,4-alpha-glucan branching enzyme | SAMN05421757_102551 | Not Available | Positive | 1477192 - 1479405 | 82239.5 |
| glucose-1-phosphate adenylyltransferase | SAMN05421757_102552 | Not Available | Positive | 1479446 - 1480714 | 47086.0 |
| starch synthase | SAMN05421757_102553 | Not Available | Positive | 1480711 - 1482147 | 50673.6 |
| glycogen operon protein | SAMN05421757_102554 | Not Available | Positive | 1482144 - 1484237 | 78663.7 |
| 4-alpha-glucanotransferase | SAMN05421757_102555 | Not Available | Positive | 1484234 - 1486165 | 69912.2 |
| phosphoglucomutase | SAMN05421757_102556 | Not Available | Positive | 1486234 - 1487865 | 57509.8 |
| phosphoenolpyruvate synthase | SAMN05421757_102557 | Not Available | Positive | 1488048 - 1490432 | 86987.5 |
| pep-cterm protein-sorting domain-containing protein | SAMN05421757_102558 | Not Available | Positive | 1490639 - 1491256 | 21774.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
