Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiosulfate-binding protein soxy | SAMN05421757_102529 | Not Available | Negative | 1456036 - 1456452 | 13498.2 |
| monoheme cytochrome soxx (sulfur oxidation) | SAMN05421757_102530 | Not Available | Negative | 1456511 - 1456987 | 16458.6 |
| thioredoxin-related protein | SAMN05421757_102531 | Not Available | Negative | 1457188 - 1457754 | 21388.6 |
| cytochrome c-type biogenesis protein | SAMN05421757_102532 | Not Available | Negative | 1457795 - 1458529 | 26271.3 |
| thioredoxin-like domain-containing protein | SAMN05421757_102533 | Not Available | Positive | 1458608 - 1458994 | 14113.1 |
| transcriptional regulator, arsr family | SAMN05421757_102534 | Not Available | Positive | 1459179 - 1459523 | 12850.5 |
| hypothetical protein | SAMN05421757_102535 | Not Available | Positive | 1459586 - 1460641 | 35444.9 |
| predicted oxidoreductase | SAMN05421757_102536 | Not Available | Negative | 1460703 - 1461689 | 35602.6 |
| hypothetical protein | SAMN05421757_102537 | Not Available | Negative | 1461841 - 1462686 | 29984.8 |
| phosphate butyryltransferase | SAMN05421757_102538 | Not Available | Negative | 1462813 - 1464195 | 49328.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
