Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyoxylase, beta-lactamase superfamily ii | SAMN05421757_10198 | Not Available | Positive | 108171 - 109226 | 39210.5 |
| hypothetical protein | SAMN05421757_10199 | Not Available | Positive | 109248 - 109703 | 16754.8 |
| aa3 type cytochrome c oxidase subunit iv | SAMN05421757_101100 | Not Available | Positive | 109799 - 109939 | 5054.31 |
| hypothetical protein | SAMN05421757_101101 | Not Available | Positive | 109969 - 110649 | 25137.9 |
| branched-chain amino acid transport protein | SAMN05421757_101102 | Not Available | Negative | 110635 - 110967 | 11673.6 |
| predicted branched-chain amino acid permease (azaleucine resistance) | SAMN05421757_101103 | Not Available | Negative | 110964 - 111677 | 25080.2 |
| acetyltransferase (gnat) family protein | SAMN05421757_101104 | Not Available | Positive | 111792 - 112415 | 22760.6 |
| hypothetical protein | SAMN05421757_101105 | Not Available | Negative | 112419 - 113459 | 37469.0 |
| transcription elongation factor grea | SAMN05421757_101106 | Not Available | Negative | 113478 - 113948 | 17029.2 |
| gscfa family protein | SAMN05421757_101107 | Not Available | Positive | 114139 - 115254 | 41091.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
