Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| periplasmic nitrate reductase subunit napa apoprotein | SAMN05421757_102489 | Not Available | Positive | 1409520 - 1412012 | 92630.3 |
| periplasmic nitrate reductase subunit napg | SAMN05421757_102490 | Not Available | Positive | 1412061 - 1412918 | 30093.0 |
| ferredoxin-type protein naph | SAMN05421757_102491 | Not Available | Positive | 1412915 - 1413838 | 33595.4 |
| periplasmic nitrate reductase subunit napb | SAMN05421757_102492 | Not Available | Positive | 1413860 - 1414300 | 16022.7 |
| cytochrome c-type protein napc | SAMN05421757_102493 | Not Available | Positive | 1414329 - 1415054 | 27524.3 |
| pas/pac sensor hybrid histidine kinase | SAMN05421757_102494 | Not Available | Negative | 1415068 - 1417629 | 92279.6 |
| hypothetical protein | SAMN05421757_102495 | Not Available | Negative | 1417668 - 1418192 | 18409.5 |
| polymer biosynthesis protein, wecb/taga/cpsf family | SAMN05421757_102496 | Not Available | Negative | 1418335 - 1419750 | 50826.7 |
| two component transcriptional regulator, luxr family | SAMN05421757_102497 | Not Available | Positive | 1420025 - 1420639 | 22095.5 |
| uncharacterized protein involved in exopolysaccharide biosynthesis | SAMN05421757_102498 | Not Available | Positive | 1420755 - 1422254 | 53464.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
