Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycerate dehydrogenase | SAMN05421757_102469 | Not Available | Negative | 1385522 - 1386514 | 36190.7 |
| d-mannonate dehydratase | SAMN05421757_102470 | Not Available | Negative | 1386536 - 1387762 | 45432.1 |
| predicted dehydrogenase | SAMN05421757_102471 | Not Available | Negative | 1387837 - 1389027 | 43156.8 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN05421757_102472 | Not Available | Negative | 1389108 - 1390664 | 58756.4 |
| transcriptional regulator, gntr family | SAMN05421757_102473 | Not Available | Negative | 1390744 - 1391559 | 30314.7 |
| mannose-6-phosphate isomerase | SAMN05421757_102474 | Not Available | Negative | 1391882 - 1393102 | 43869.4 |
| heavy metal-(cd/co/hg/pb/zn)-translocating p-type atpase | SAMN05421757_102475 | Not Available | Negative | 1393231 - 1395210 | 68578.2 |
| uncharacterized protein, upf0303 family | SAMN05421757_102476 | Not Available | Positive | 1395943 - 1396416 | 16456.8 |
| hypothetical protein | SAMN05421757_102477 | Not Available | Negative | 1396433 - 1396702 | 9954.9 |
| hypothetical protein | SAMN05421757_102478 | Not Available | Negative | 1396837 - 1398843 | 72351.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
