Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_102429 | Not Available | Positive | 1338376 - 1339410 | 36001.8 |
| capsular polysaccharide transport system atp-binding protein | SAMN05421757_102430 | Not Available | Positive | 1339523 - 1340272 | 28553.4 |
| capsular polysaccharide transport system permease protein | SAMN05421757_102431 | Not Available | Positive | 1340226 - 1341884 | 60426.9 |
| 2-dehydro-3-deoxyphosphooctonate aldolase (kdo 8-p synthase) | SAMN05421757_102432 | Not Available | Positive | 1341895 - 1342728 | 28899.1 |
| Trna-gln | Not Available | Not Available | Positive | 1342811 - 1342885 | Not Available |
| type i phosphodiesterase / nucleotide pyrophosphatase | SAMN05421757_102434 | Not Available | Positive | 1343487 - 1345214 | 62723.3 |
| choline dehydrogenase | SAMN05421757_102435 | Not Available | Negative | 1345973 - 1347649 | 61704.0 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN05421757_102436 | Not Available | Positive | 1347876 - 1348640 | 28743.0 |
| transcriptional regulator, arac family | SAMN05421757_102437 | Not Available | Negative | 1348770 - 1349663 | 32505.3 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421757_102438 | Not Available | Positive | 1349835 - 1350785 | 34314.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
