Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoside abc transporter atp-binding protein | SAMN05421757_102399 | Not Available | Positive | 1312796 - 1314379 | 57263.4 |
| nucleoside abc transporter membrane protein | SAMN05421757_102400 | Not Available | Positive | 1314376 - 1315482 | 39143.1 |
| nucleoside abc transporter membrane protein | SAMN05421757_102401 | Not Available | Positive | 1315485 - 1316453 | 34150.4 |
| hypothetical protein | SAMN05421757_102402 | Not Available | Positive | 1316621 - 1317544 | 32323.2 |
| conserved hypothetical protein | SAMN05421757_102403 | Not Available | Positive | 1317544 - 1318317 | 28076.9 |
| transcriptional regulator, asnc family | SAMN05421757_102404 | Not Available | Negative | 1318319 - 1318819 | 18453.2 |
| thioredoxin reductase (nadph) | SAMN05421757_102405 | Not Available | Positive | 1319019 - 1319984 | 34102.6 |
| protein of unknown function | SAMN05421757_102406 | Not Available | Negative | 1320063 - 1320512 | 16250.7 |
| sulfate adenylyltransferase | SAMN05421757_102407 | Not Available | Positive | 1320791 - 1322869 | 77179.2 |
| hypothetical protein | SAMN05421757_102408 | Not Available | Positive | 1323059 - 1323595 | 18980.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
