Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalt/nickel transport system atp-binding protein | SAMN05421757_102389 | Not Available | Positive | 1304384 - 1305064 | 24798.3 |
| rhomboid family protein | SAMN05421757_102390 | Not Available | Negative | 1305230 - 1305931 | 25391.3 |
| tryptophanyl-trna synthetase | SAMN05421757_102391 | Not Available | Positive | 1306007 - 1307038 | 37739.9 |
| branched chain amino acid aminotransferase apoenzyme | SAMN05421757_102392 | Not Available | Positive | 1307417 - 1308280 | 30798.6 |
| hypothetical protein | SAMN05421757_102393 | Not Available | Positive | 1308280 - 1309320 | 36447.6 |
| nucleotide-binding universal stress protein, uspa family | SAMN05421757_102394 | Not Available | Positive | 1309323 - 1309778 | 16515.3 |
| fe-s cluster biogenesis protein nfua, 4fe-4s-binding domain | SAMN05421757_102395 | Not Available | Positive | 1309867 - 1310433 | 19816.4 |
| trna threonylcarbamoyl adenosine modification protein yeaz | SAMN05421757_102396 | Not Available | Positive | 1310423 - 1311100 | 22899.4 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN05421757_102397 | Not Available | Positive | 1311097 - 1311510 | 14911.7 |
| nucleoside-binding protein | SAMN05421757_102398 | Not Available | Positive | 1311711 - 1312709 | 34598.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
