Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| precorrin-4/cobalt-precorrin-4 c11-methyltransferase | SAMN05421757_102378 | Not Available | Negative | 1293763 - 1294527 | 27048.7 |
| cobalt-precorrin 5a hydrolase / precorrin-3b c17-methyltransferase | SAMN05421757_102379 | Not Available | Negative | 1294524 - 1296332 | 62160.6 |
| precorrin-2/cobalt-factor-2 c20-methyltransferase | SAMN05421757_102380 | Not Available | Negative | 1296325 - 1297023 | 24862.1 |
| precorrin-6y c5,15-methyltransferase (decarboxylating) | SAMN05421757_102381 | Not Available | Negative | 1297020 - 1298213 | 42367.1 |
| precorrin-8x methylmutase | SAMN05421757_102382 | Not Available | Negative | 1298210 - 1299787 | 55071.5 |
| sirohydrochlorin cobaltochelatase | SAMN05421757_102383 | Not Available | Negative | 1299784 - 1300911 | 41104.4 |
| cobalt/nickel transport protein | SAMN05421757_102385 | Not Available | Positive | 1301585 - 1302376 | 28391.6 |
| cobalt/nickel transport system permease protein | SAMN05421757_102386 | Not Available | Positive | 1302381 - 1302998 | 20294.9 |
| nickel transport protein | SAMN05421757_102387 | Not Available | Positive | 1302995 - 1303606 | 21016.1 |
| cobalt/nickel transport system permease protein | SAMN05421757_102388 | Not Available | Positive | 1303603 - 1304397 | 28852.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
